rs27920440 SNP Detail

Summary

• ID
  rs27920440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63326453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAA AGACATTCAT AAATATAGTG
  Y
  ATCCCTACCA GATGAGGCCC TTACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38053160	NES09389457	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	T	T	C	C	C
ss146443679	ENSMUSSNP2067692	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27920440					SNP	C	C	T	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053160	NES09389457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63326453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	1657 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	1900 bp upstream
Rr593544	regulatory region 593544	990 bp proximal
Tssr37559	transcription start site region 37559	1389 bp upstream
Tssr42046	transcription start site region 42046	1777 bp downstream
Tssr42047	transcription start site region 42047	1794 bp downstream
Tssr42048	transcription start site region 42048	1972 bp downstream
Tssr42049	transcription start site region 42049	1998 bp downstream