rs27920569 SNP Detail

Summary

• ID
  rs27920569
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63132754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGC CTGTGGTTGC CATTCGCAGA
  S
  GGTCGTGTGC AAGCGGGGAG TGTGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38053993	NES09397077	PERLEGEN	MM_PANEL2	f	SNP	G	C			G	G	G	G
ss45595543	mCV22875315	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss146440584	ENSMUSSNP5545950	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27920569					SNP	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053993	NES09397077	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63132754 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	Intron
Cpgi14368	CpG island 14368	within coordinates
Rr593488	regulatory region 593488	573 bp distal
Rr593489	regulatory region 593489	556 bp distal
Rr593490	regulatory region 593490	34 bp distal
Rr593491	regulatory region 593491	428 bp proximal
Rr593492	regulatory region 593492	778 bp proximal
Rr593493	regulatory region 593493	929 bp proximal
Tssr1192	transcription start site region 1192	480 bp downstream
Tssr37533	transcription start site region 37533	416 bp downstream
Tssr37534	transcription start site region 37534	367 bp downstream
Tssr37535	transcription start site region 37535	885 bp upstream
Tssr37536	transcription start site region 37536	1023 bp upstream
Tssr37537	transcription start site region 37537	1040 bp upstream