rs27920570 SNP Detail

Summary

• ID
  rs27920570
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63130862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCATGA ACCTACATTC
  TGCATAGGCA CAGTGAAGCC CGGATGGACA CATTTCAATC TTTTGAGACC TCCAATAGTT
  TCCTATGTGT CTTTGGGGCT GTTAGGTTCT TGACACTAGC ACTGTATTTA AAGACCACAT
  AGGGGAGACT TGGAAAGGCT TTGGTGCCAC CACTGGTCAG TGAGCTATCT TTGAGGAAGT
  R
  TCTTCTTGCC TGGACACCTG CGTCCTCACA GGGGAGAGAC CTGGAGACTT TATTTTCTTT
  GCCACACACA GTTTTCAAGG CCAGTCTGCA ACCCACCATA CGTTCCTATG ATTCTTCCAT
  GGAAGATATC CTTTCTCCAC AGCTATAGGC ATAGCTAACA TCCTTCAGGT TCTAAACACC
  ACCTCCTCCT GGGTACATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	NZW/LacJ	WSB/EiJ
ss38053994	NES09397076	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	NZW/LacJ	WSB/EiJ
rs27920570					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38053994	NES09397076	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63130862 () rs orientation: forward

Symbol	Name	Function Class
Col27a1	collagen, type XXVII, alpha 1	1384 bp upstream
Cpgi14368	CpG island 14368	1347 bp proximal
Rr593488	regulatory region 593488	1051 bp proximal
Rr593489	regulatory region 593489	1315 bp proximal
Rr593490	regulatory region 593490	1837 bp proximal
Tssr1192	transcription start site region 1192	1399 bp upstream
Tssr37533	transcription start site region 37533	1463 bp upstream
Tssr37534	transcription start site region 37534	1509 bp upstream