rs27925958 SNP Detail

Summary

• ID
  rs27925958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:58811792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTATGAC CACAGTTATA
  GACGACAAGT TGGTAGATTT GATCTTGGAA AACTGTGGAA ACTCCCTCAT GAAAATAACA
  TCAATATGTT AAAAAGGAAA ATGCAGTCAT GGCATCTTCT TCATTTTCTT TAACCTCCTC
  GAAAAATAAT GCCAGGAGGA GTAGAAATGG TGATTTTTAT TTTTAAAGTC AGCTTGTAAC
  R
  TAATCTTATC ATGATAATAA TCTTCTGTCT TATGAAGCCT TTAATTGTAG TGCCTCATCA
  ACTCAGAGGA AATCGTAACT ATTAAGAATA TGGAAACAGA CACTGTCAGC TTTGGGCACT
  TTTAGAACAT AAAAGCAATT CTACTGCAGC AAATGGGTAC TACTAAGGAG TTCTAATATC
  ATCAATTTCC TATCTGCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38058318	NES09330637	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	G		A
ss320317954	CHEV_2_58774191	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27925958					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38058318	NES09330637	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:58811792 () rs orientation: forward

Symbol	Name	Function Class
Ccdc148	coiled-coil domain containing 148	within coordinates
Gm75104	predicted gene, 75104	within coordinates
Rr373217	regulatory region 373217	935 bp upstream