rs27928750 SNP Detail

Summary

• ID
  rs27928750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52868717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCACTGCA CGTGGGCTGC
  ACATCTGGAT TCTGGTCTAG CTCCTTCTTC CTATGTTCCT TGTACCTCTG TTGGTGTAGG
  TCACAGACCA TGAAAATGGG TGTCTAAGGA CCAGCAGCCA TCTAGACAAG TTCTAATCCA
  GCTAAGCAAA AATGGCTGAT GATCATTGTT TAGGTTTTGT CTATTTGGAG CCTCTTGGGT
  Y
  CTGGCCAGTC TAAAAATCCC TGAGGTTTGT GCATAACTTC ACACTGGAAA ATTAAAGCAA
  CAGAAGAAAA TAGAAGATGG AGATTGAGTG TAGACTGAAC AATAATGGTA TAAAAATATG
  TTAGATACTT TATAATTATG GTCTGCCATG GTTCCAGTTA AGGTGTCTCT GGTCAAGTGA
  CGTAAGACAT GGTGTGTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38072078	NES09477240	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27928750					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38072078	NES09477240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52868717 () rs orientation: forward

Symbol	Name	Function Class
Fmnl2	formin-like 2	within coordinates
Rr61771	regulatory region 61771	within coordinates
Tssr17748	transcription start site region 17748	1757 bp downstream