rs27928755 SNP Detail

Summary

• ID
  rs27928755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52867395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGGAGGG GAACAGCCAC
  AGACCCCATT AGTAAAGTCT GGGCTTGGAG GGAACTGAAG GAACAACCTT ACAAAGTAGA
  AATAGTTCTT AACATCTTGG ATTGTCATTT TCTTTATTGA TAAAATAAGT TTTTTGTTTG
  TTTGTTTTTG TTTGTTGTTT TAAGCCTGTT CCACTCACAG TCCTCTTTGT ATGATTCTGA
  Y
  GTATAAAACA AGTGTACAAA TGAAACATTT TCTGTAGTAA TGCATATCTC CATTTTAATT
  TAATTCTTCG CTGTATATAC AACTTCACGA TCTCCTGAGG AGGAAACCGT ATCTGCACAC
  CAGTGAGATA GAAGAGCTTA TTTATTTTTA CATAAATATT GGCATTTATG TCTCAAGTAT
  TCAATATTGT AGAGCATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38072083	NES09477263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27928755					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38072083	NES09477263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52867395 () rs orientation: forward

Symbol	Name	Function Class
Fmnl2	formin-like 2	within coordinates
Rr61771	regulatory region 61771	607 bp proximal
Tssr17748	transcription start site region 17748	435 bp downstream