rs27928760 SNP Detail

Summary

• ID
  rs27928760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52865128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCTGA ATTTCTAGAG
  GAATTGCAAA TGTTGAAGGC ATCTGGCATG AAGTGATTTT TGATAAGGGG TTATGGGCCT
  GTGCCTTGCC TTATGCTGGG TTTTCTGGCT CATTTTCAGC CACTGGTACC CTCCAGCTTT
  GCCACTATGG GGCTATGAGT CATTTGCTTT TTAGCCATGG TTTTCCATCT ATTAAGTGGT
  R
  CAAATGATGA TGTTGATGTT GAATCTAGAC TGAAAAGTCT AAGAAAAAAT AATGTACAGA
  GAGTGTTTAA AGAGGTATGC ACACCACAGA GTACCCCCTG TAGAGCTATA ATGGCACCAA
  GTGTAAGTGT GAGACAAGCT GGTGGTAGGA TGGGCAATAA GGTTCCAAAG AGTCTTGGCA
  ATGTTTTGGG CCAAGAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38072088	NES09477309	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27928760					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38072088	NES09477309	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52865128 () rs orientation: forward

Symbol	Name	Function Class
Fmnl2	formin-like 2	within coordinates
Tssr17748	transcription start site region 17748	1824 bp upstream