rs27930377 SNP Detail

Summary

• ID
  rs27930377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:48386998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATAAGC TTCAAAATTA
  TCTCAGCAGC AAAAGCCCTG ATGGATTCAA CCAGTGCATC ACATACACAA TTCACTTGTG
  GCCCCCAGTC AGTGGCCAGG CTGAAGGCTA ATTATGGCAG CAGCAGGAGA TGAACAGTTC
  CTGAAAGGTA AGCCTGAAGC TCCTCCCAGA GCTGATGGGA CCATTCTTCT GTGTCAGAAC
  Y
  AGATGTGCCA AGGGGTGCTG CTGGCACTTT GCACTTCCTT GAGCCCCCAA GGATGCAGGC
  ACATCCATCA TGGGGCACAC ACAAGCTCAA GGGCAAAGGA TGCTCTCCCA CATGCTTTCT
  GAAATACCTC CTTTGAGTGA TGACACTGAG CAGCTGGAAT GCTCTAAGTG TTAATGTTTT
  ATGCTGGGTC GCAAAAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38087214	NES09336022	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27930377					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38087214	NES09336022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:48386998 () rs orientation: forward

Symbol	Name	Function Class
Gm39809	predicted gene, 39809	within coordinates
Rr373140	regulatory region 373140	318 bp upstream