rs27930379 SNP Detail

Summary

• ID
  rs27930379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:48386855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATGGGC CATTAGGAAC
  CAGATCTGTG TCTTCAAAAC AGTTACTGGG AAGAAAGCAT TTAGAGGCTT GAGCTCTGTT
  TTGTGACCAT TTGGCCTACT GAAAAGATTT AACACATAAC TGCAAGACAC TCACCAGTGA
  GTCCTGCATA AGCTTCAAAA TTATCTCAGC AGCAAAAGCC CTGATGGATT CAACCAGTGC
  R
  TCACATACAC AATTCACTTG TGGCCCCCAG TCAGTGGCCA GGCTGAAGGC TAATTATGGC
  AGCAGCAGGA GATGAACAGT TCCTGAAAGG TAAGCCTGAA GCTCCTCCCA GAGCTGATGG
  GACCATTCTT CTGTGTCAGA ACTAGATGTG CCAAGGGGTG CTGCTGGCAC TTTGCACTTC
  CTTGAGCCCC CAAGGATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38087216	NES09336019	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27930379					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38087216	NES09336019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:48386855 () rs orientation: forward

Symbol	Name	Function Class
Gm39809	predicted gene, 39809	within coordinates
Rr373140	regulatory region 373140	461 bp upstream
Rr556580	regulatory region 556580	1496 bp distal