rs27931197 SNP Detail

Summary

• ID
  rs27931197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50195720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGAGCAAA CACTTTCAGT TTAAAACTCA AACTGGATAC
  TACAGTCTGA AAGGATGCAG TGGGTATCAG GGTGCATCAT TTGATTTCCT GGCCTTACAT
  Y
  ACCTCATCCA TAGGTATAGG CTCCATGAAA TCTCTCTTCC TGTGAAGATT CTGAGATACC
  ATAGGTACTG GAGTTATGGA AACAACAGGA CTTAGTCCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38082119	NES09339651	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27931197					SNP	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38082119	NES09339651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50195720 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	738 bp upstream
Rr556732	regulatory region 556732	532 bp distal
Rr556733	regulatory region 556733	225 bp distal
Rr556734	regulatory region 556734	980 bp proximal
Rr556735	regulatory region 556735	1094 bp proximal
Rr556736	regulatory region 556736	1212 bp proximal