rs27931201 SNP Detail

Summary

• ID
  rs27931201
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50195446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCTTCT CTCTTTAAGA
  TGGAATCCAC CCTGTAAAGC AAGGAAGTCA TGTACAGACT AGGAATTCAT GAGCAGTAGG
  ATTAAGCTCT TCCATGAGCC TCCATTGACA CTAGAAGTGT AGACCACAGG TGCAATATGC
  ACTATGAACA CCAGCTGTCA CTGCTCTACA GTTTACAAAG CCACCCTGAG TGGTTACCAG
  S
  GAGGAGAATT GTTGTTAAGA ACATTTTCTG GATGTGAAGC ATAAAGGTCT AGGACAACAT
  GAATTCCATT TCAAACCATT ATGTATGACC CTGAGCTTTT GTTAAAAGAT CTCTCTGAGA
  TGTAAATAGG CTGCACAGAT GTGTTTGTTG AATGAGGAAA AAGTACTTGG GAGATAGAGC
  AAACACTTTC AGTTTAAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38082123	NES09339647	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G	G	C	C		G	G	C
ss146531317	ENSMUSSNP3383246	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G					G				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27931201					SNP	C	G	G	G	G	G	G	G	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38082123	NES09339647	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50195446 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	464 bp upstream
Rr556732	regulatory region 556732	258 bp distal
Rr556733	regulatory region 556733	within coordinates
Rr556734	regulatory region 556734	1254 bp proximal
Rr556735	regulatory region 556735	1368 bp proximal
Rr556736	regulatory region 556736	1486 bp proximal