rs27931210 SNP Detail

Summary

• ID
  rs27931210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50194771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAAAGA CAAAAGACAG
  AATTTATGCT CAACTAAGCA GATCTAAAAC ATATTAGAAA CTTAGAGAAA GCATTCTGTG
  TTGTTTTAAT GAAGGTTTTA TTGAACTTTT ACTTGACTCC AGTAAAATAA GGATGACAAT
  AGTAAGAATT TTAAAAGAAA AGTCTAGCAC GATTTTTTCG TTTGTCCCGA TCACAGAACT
  Y
  GGCCTTTGGA AATCCATCTT TAACATGACC TGCACAGAAG CGCCAGCAGC CCTCTAGTAC
  TGACACACTG AGACAGCATG CACTTCAGTT TCTTATAGGA AACCCACAGC TGACCTGGAA
  GAAAGCACCT TGTATTTTCT AGTCTGTTCT TGATAGATGG CATGGCTGTC ATAAATAAAT
  CACAGTGGAC GTTGTACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38082132	NES09339690	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C	C		C	C	C	T
ss146531281	ENSMUSSNP2017418	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27931210					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38082132	NES09339690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50194771 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	within coordinates
Rr556732	regulatory region 556732	176 bp proximal
Rr556733	regulatory region 556733	526 bp proximal
Rr556734	regulatory region 556734	1929 bp proximal
Tssr17697	transcription start site region 17697	1467 bp downstream