rs27931218 SNP Detail

Summary

• ID
  rs27931218
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50193953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGTTCT TATTTGAGCA
  CTAGGACAGA GGGGAAGGAC TTGCTGAAGG ACTTCTAGTG AATAGTGGGG GATGAAGTTT
  TGATTGCTGT GCTATTCAAA GGAAAAAACA TATCCCCGTC CCAAAGACAG AAATGTTTGT
  GTTACCTCAA TGCTTCCTGG ACTTGACCAG TGTCCTGCCA CAGGTGGTCA ATAGATACAT
  M
  CTGAAAGCTG AACAGATGAA GTCACGATGG CAGCTATCAA TCACAGCTGT GCTCTGACAT
  TCTGTTCCTG GGTGTCGCAG TTATCCTGCA TCTATCGCTC CAATAACTCT TCAAAGGAGG
  TGGGAATTTC TACATTTCAC AAAGAAATTA AGTGGATCTC AGATACAGAG TGAACTGCCA
  GATGCCACAG AGCTACGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38082140	NES09339713	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C	C	C	C	A	A	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27931218					SNP	A	C	C	C	C	C	C	C	A	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38082140	NES09339713	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50193953 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	within coordinates
Rr556732	regulatory region 556732	994 bp proximal
Rr556733	regulatory region 556733	1344 bp proximal
Tssr17697	transcription start site region 17697	649 bp downstream