rs27936086 SNP Detail

Summary

• ID
  rs27936086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78720383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTTGTTC TTGCTTTTGT
  TGCCTGAATT GTATCTTCAG GTTGCTCCTT ACTGTTCCCC ACTCCTTTCT CTTATCATGC
  ATATATATTG CTGCAAATAT CACTGCTTGC TATGTTTGTG TGTGTTATTT TTATTTTCAT
  CTTGTTACCA CGATTTTTTT TTAAAAAAAT TCCCCAGGGT CCCATTCATT AAATACCATG
  Y
  TTAGTTCTCT GTACAACTTT TAAAGATTTG TTTATTTCTG TGATGGCAAA AGCGTGTGCA
  CCGTGGCTTC AGTAAACCTG AATACTTGCC CCGTTTACTA GACTAGACCT GAAAATATAA
  ACAGTATTGG TACTAGTTAC TTGTCTTGTT GTTGTGACAC CATGAGAAGA AGCAACTTAG
  GGGAGGAAAG AAAGGTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38095606	NES09256321	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27936086					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38095606	NES09256321	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78720383 () rs orientation: forward

Symbol	Name	Function Class
Gm51431	predicted gene, 51431	within coordinates
Ube2e3	ubiquitin-conjugating enzyme E2E 3	within coordinates