rs27936088 SNP Detail

Summary

• ID
  rs27936088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78718933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTTGTC CCTGAGGTCA
  AGGTGGCTGT TAGAAAGGGA CATGCATTTG CAATGGCTTG TGTAAGTTTA ATGAAAGAAA
  TAGCATAGCA GAATCAGCAT CTGTGACTTT GAGAGTCACA AACATGCATT TCATCTCAGC
  TTTCCCTCTT ATATTGTCTT AATTAATTTA TATTGTGTTT CTCATACCAT AAAGACATTT
  R
  GGTATGAATC TCTGACTTAT AGCTATTGTC AGAACTGTGG ATGAATTCTT TATGGCTATG
  GAATTATACA TCTTTATTCC ATTTAATGCA AAGATCTACT TTTATACTTT TAATAATTTG
  GGTATCAGGT CTCAATATCT TAATATGTTT TTGTGAATTT GAAGTTATTT GTTTTAGTTA
  ATGAAGTAAT AAAAATGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38095608	NES09256353	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A		G	A	A	A	G	G	G	A
ss45225873	mCV25372830	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		A
ss146781768	ENSMUSSNP503610	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27936088					SNP	G	G	A	A	A	A	A	G	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38095608	NES09256353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78718933 () rs orientation: forward

Symbol	Name	Function Class
Gm51431	predicted gene, 51431	807 bp upstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3	within coordinates