rs27936091 SNP Detail

Summary

• ID
  rs27936091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78718675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATATAGT CTTTATCATT
  GTGATTTATG TCTTATCAGT TCCTAGTGTC ACCAGTACTT GTGTTATGAA ACAGTGTGTT
  CTTAAACTTT GTTCAGTGCT GTTTCAACAT TGAGAATGAT TATGTCGTTT CTCTTAAGTT
  GGTTTATGTA GTGTATAACC TTTATGTGTT TTGTTAATAT ATTCAACCTA TCAGGCATTC
  R
  TTTGCTGTGG GATGAGAGCA GCGAAGCTGA CATATGAATG TGGTTTGTGC TGCAGCTGTT
  GCTTGTCCCT GAGGTCAAGG TGGCTGTTAG AAAGGGACAT GCATTTGCAA TGGCTTGTGT
  AAGTTTAATG AAAGAAATAG CATAGCAGAA TCAGCATCTG TGACTTTGAG AGTCACAAAC
  ATGCATTTCA TCTCAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38095611	NES09256350	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27936091					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38095611	NES09256350	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78718675 () rs orientation: forward

Symbol	Name	Function Class
Gm51431	predicted gene, 51431	1065 bp upstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3	within coordinates