rs27940068 SNP Detail

Summary

• ID
  rs27940068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75759733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTTGAG GGTTCCCCCC
  CCCCCCATCA CTTAATCCTT AGTGATTTTT GATTTTGACA GAGGCTCAGC TTTTAACAGG
  AGAAAAGGAG GGAGCACAGC CGGTGCAGGT TAGGACTGAA GAGCTCCGAG TTCTCTGCCT
  TTGGCATTGT CAGTTCTGGA GGCTTGGCTT GGCTTGGCTC AGGGCTCTAT GCTCCATTAT
  R
  AGCCATCTGC CTACAGATTC ATTTAATTCT TACCAGTTTC TCTTTACTAA AAAAAGAAAA
  TCCTGAAAGT ATAAAAGGTT TCCTTAAACT GTTGAAGTGT GTGTCTGACA TGAAGGATGT
  AACCAACCTT TCTGTTCCTT AAGCCAAATA GTGTTCATCT TCAGTGTGAA ACTTAACTGT
  ACAAACTGCT TGTATAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38108387	NES09253018	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27940068					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38108387	NES09253018	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75759733 () rs orientation: forward

Symbol	Name	Function Class
Agps	alkylglycerone phosphate synthase	within coordinates
Rr559612	regulatory region 559612	753 bp proximal
Tssr18481	transcription start site region 18481	1945 bp downstream