rs27943362 SNP Detail

Summary

• ID
  rs27943362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75186690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAATCCT TATGCTCTAC
  TCTAGTTACC ATGGAAGTGA ATACCTAGTG GTGTTTTTTT TCCCTGAAAC TTGGTGTATT
  GACCCAAACT ATATAAAGCA ATTATGTGGT TATTAAGCAG ATGAGTCCCA AGAGACATTT
  CTAGCATCGA GGGAAACAGA CTGTGCACAC CAAGGTAAAA GCAACCTTTG GAAAGGTTTC
  Y
  CTGGGCTGGG TGTAGGTGGT GGGTGGCTTC CAGGGAAGGA GAGTCAAACC CCTCTGAAAG
  GAGGCTGAGA AACACCTCAG GCTTCCACAG TTGGGTGAGT CCCTGGAAGT AAGGCCTGAC
  TGCCCCCTTC CTGTGCCAAC TGTGCAACTT TCCAATACCA GGAATAGATA GTTGCCTCTA
  CAACAGCCAG GGCCTGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38110685	NES09273453	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	T	C	T		T
ss320350053	CHEV_2_75194403	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27943362					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38110685	NES09273453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75186690 () rs orientation: forward

Symbol	Name	Function Class
Gm39857	predicted gene, 39857	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559471	regulatory region 559471	1495 bp distal
Rr559472	regulatory region 559472	841 bp proximal