rs27947592 SNP Detail

Summary

• ID
  rs27947592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:52059663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAACACT GCCCTGGTGT
  GGCTGCTTCT AAGAAGGTGT CATTGAAAGC AAGAGGCTGT TTCAGATGAC TCGTACATCC
  TTACAGGAAC TGGAGCTATC TGGTTTTTGT TTTCCTCCTG GGCATCAAAC CCAGGGGTAA
  ACACTGTAAA GCAACATCCT TAGCCCTAAC AGAAGCATTT TTACAATCTG AGAGGCATTG
  Y
  AGCTGATGGT ATTTTATTGG TAATTGGTAG TAATTGGTAG ATTAATGTAA TTTGGAGGAC
  TATCACCAAA TAGTAATTTT GTGATAAACA GAATATATCC ATAGCAGAGA GGAGACCATA
  GGAGCTCAGA GGAGGAAATG TGCTGCCAAT GCCTGAAAGG CGTTGTTTTT GGAACCAATG
  ATGGAGCTTA CAGAACTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ
ss38075314	NES09356502	PERLEGEN	MM_PANEL2	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ
rs27947592					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38075314	NES09356502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52059663 () rs orientation: forward

Symbol	Name	Function Class
Neb	nebulin	Intron
Rr556915	regulatory region 556915	24 bp distal
Tssr24033	transcription start site region 24033	510 bp upstream
Tssr24034	transcription start site region 24034	270 bp downstream
Tssr24035	transcription start site region 24035	857 bp downstream