rs27947593 SNP Detail

Summary

• ID
  rs27947593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:52059431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAGCTG TATAAGGACC
  AGGCATGCGG CACACGCCTT TAATCACCGA AAAGGCAGAG CCATCAGATG TCTGTGTGTT
  CTAAGCTAGA ATGGTTAGCA AGTTCCAGGC CAGCCAGGGC TATGCAGAGA GCCCTGTCAT
  CCCCCCTGAA AACCAACAAA CCCCTCCAAA AAGAAAAGGA AATGGTTGGG TAGATAAAAA
  Y
  GCCAAGTGCA GCACTGTTGA TAAATACCAG ATGTAAACAC TGCCCTGGTG TGGCTGCTTC
  TAAGAAGGTG TCATTGAAAG CAAGAGGCTG TTTCAGATGA CTCGTACATC CTTACAGGAA
  CTGGAGCTAT CTGGTTTTTG TTTTCCTCCT GGGCATCAAA CCCAGGGGTA AACACTGTAA
  AGCAACATCC TTAGCCCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ
ss38075315	NES09356499	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ
rs27947593					SNP	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38075315	NES09356499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52059431 () rs orientation: forward

Symbol	Name	Function Class
Neb	nebulin	Intron
Rr556915	regulatory region 556915	within coordinates
Tssr24033	transcription start site region 24033	278 bp upstream
Tssr24034	transcription start site region 24034	502 bp downstream
Tssr24035	transcription start site region 24035	1089 bp downstream