rs27947597 SNP Detail

Summary

• ID
  rs27947597
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:52058469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA GAAGATTTCA CAAAGGAGAA
  M
  CTGAGAGATA GAAAGACAAG GGCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J
ss38075319	NES09356539	PERLEGEN	MM_PANEL2	f	SNP				A		C
ss45285856	mCV23305972	ABI	CRAMUS_MOUSE	f	SNP	C	C	A		C
ss146585073	ENSMUSSNP4829580	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss320302478	CHEV_2_52023977	CHEVERUD	SCREENING_POP	f	SNP							C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	SM/J
rs27947597					SNP	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38075319	NES09356539	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52058469 () rs orientation: forward

Symbol	Name	Function Class
Neb	nebulin	Intron
Rr556915	regulatory region 556915	776 bp proximal
Tssr24033	transcription start site region 24033	663 bp downstream
Tssr24034	transcription start site region 24034	1464 bp downstream