rs27952813 SNP Detail

Summary

• ID
  rs27952813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72617491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAATTGT AACCAGCAAT
  CTGATCTTGC CATTCATGAA AGTTAGATTA AGAACTTTTT CCTTGGGGGT CATAAGAGTT
  GAGTCTCTGT ATGGCTGTGT TACTGGGTAG TAACTCTGTG TCAGACCATG TAGGCATTTC
  CCGTGGCGCC CATCACAACT CCTATGCAAT GTATGTTGTA ATTGCTGTTC TAAAATAAGG
  R
  AAATCAGGAC TCAAAGACAC TGGGCCATTA ATTACTTCAA TGTCATCCAG CTATTAAAGG
  ATCAACCTAT ACATCAAATT GATCTAAATC CAGAGCTACT TCATTTTATT CCTAATATAA
  GGGAATTTCT GCATCCAAAT ATCCACACCA TTTTCACAAC TCCAAGTGCT TGTTTATTGA
  CGATGTTCTT GCTAAACTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38118536	NES09286101	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A	A		A
ss320343728	CHEV_2_72625204	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27952813					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118536	NES09286101	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72617491 () rs orientation: forward

Symbol	Name	Function Class
6430710C18Rik	RIKEN cDNA 6430710C18 gene	within coordinates
Rr559035	regulatory region 559035	867 bp distal