rs27952816 SNP Detail

Summary

• ID
  rs27952816
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72617013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGGAAGA GCCCGTGGAG
  AGCTCTCTGT GCCTGCCTCT GATTACACTC TATGCTTCTT CAGACTTGAG GGTGCTCCAT
  CCCTACCTCA CCCCCAACCC TGGCAACAGA GGCCACAGTG AGGAAAGATG GAGGGGTGGG
  GAAGTTCATG CTCTCACCCC CCCACGCCCC CAACTCTGCC CACTTGTCAC TGTTAAAACT
  S
  CACCATCCGA AAGGAACTAA ATGCTGATCC AATTGCTTGA GTTTAGTAGA TCTGCAGAAA
  TGTTGTGAAT GCACAGCTTG TCCAGAACAA AGAAAGTCCT ACCGTTCCAG GGACTATGGG
  CAAAACCTGC TTGGGAGTTG CAGGGGGGAT AAGGGTGTGG ATTTGAATGT AAGAGTGTGA
  GGAGTGGAGT GTATGCGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38118539	NES09286095	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		G	C	C	G		C
ss320343723	CHEV_2_72624726	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27952816					SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118539	NES09286095	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72617013 () rs orientation: forward

Symbol	Name	Function Class
6430710C18Rik	RIKEN cDNA 6430710C18 gene	within coordinates
Gm39848	predicted gene, 39848	1687 bp downstream
Rr559035	regulatory region 559035	389 bp distal