rs27952818 SNP Detail

Summary

• ID
  rs27952818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72615490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTCTCTC ATGTGTCCAT
  CAGCTGTTCA CGTTGTCATG ATAGCCTGAT GATCACCAGG GGTGAGTCCT CCTAACAGCA
  TGTATGTAAG AGTATTCAGT TGAGTGATCT GTAAAATAAT TATATTTCAA TGGAGATACT
  ATATTGTGGG GAAAAAAATC CATTACATGT CAAGTGCTAA ATGAAGCAGC TATAGAGCCA
  Y
  GACACGTTTT ATTGGTGCTT TTAATCAGAG CAAGTAACTT TACTGCAATC TGATCATCTT
  ATTGTCTTAT GATTACCATT TGCTTCTTTA ATAGCTATGT ATTTATATGT ATACACACAC
  ATATACATAT ATATACTTTT TAAACAGTAT ATATACATAT TTTTTTAAAA ACAGCCATCA
  GTTTACTTCT AGATGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38118541	NES09286092	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27952818					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118541	NES09286092	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72615490 () rs orientation: forward

Symbol	Name	Function Class
6430710C18Rik	RIKEN cDNA 6430710C18 gene	within coordinates
Gm39848	predicted gene, 39848	164 bp downstream
Rr559035	regulatory region 559035	257 bp proximal