rs27952821 SNP Detail

Summary

• ID
  rs27952821
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72614764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACCTGG AGAGTCTTGG
  GGAGGGACTG AGGGTCACAC ACAGTGTCAA AGGAAGGACT TTTGCCAGCA GGTGAGCTAA
  CATGTCAGAA TTCCAGCGCC CCTACACAGG CACACCGGTT GCACATGTAC CAGACAAAGG
  ATTCTAAACA TATGGGACCT TCGGCTCTTC TGTGTCTTCC TCGATTTTCT GTCTGTTCTC
  S
  TATGAGACAG AGTGTCCCCA GAATACTGTG GGGTCCCCCA CTATGGGAAG ACTGGTAGAG
  AAACTAAATA CAGCACACGG GTAACCACAG ATCCTTCCTC TGTGACTCTA AATCGCAAAC
  ATAGAGCTAT CTTTAAAATC GCAGTGTACA CCACAGACTC CTAGCTCCCC AGCAAACACT
  GAATAAATGT ACATTTTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38118544	NES09286089	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27952821					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118544	NES09286089	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72614764 () rs orientation: forward

Symbol	Name	Function Class
6430710C18Rik	RIKEN cDNA 6430710C18 gene	within coordinates
Gm39848	predicted gene, 39848	within coordinates
Rr559034	regulatory region 559034	1737 bp distal
Rr559035	regulatory region 559035	983 bp proximal