rs27952822 SNP Detail

Summary

• ID
  rs27952822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72614763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCACCTG GAGAGTCTTG
  GGGAGGGACT GAGGGTCACA CACAGTGTCA AAGGAAGGAC TTTTGCCAGC AGGTGAGCTA
  ACATGTCAGA ATTCCAGCGC CCCTACACAG GCACACCGGT TGCACATGTA CCAGACAAAG
  GATTCTAAAC ATATGGGACC TTCGGCTCTT CTGTGTCTTC CTCGATTTTC TGTCTGTTCT
  Y
  GTATGAGACA GAGTGTCCCC AGAATACTGT GGGGTCCCCC ACTATGGGAA GACTGGTAGA
  GAAACTAAAT ACAGCACACG GGTAACCACA GATCCTTCCT CTGTGACTCT AAATCGCAAA
  CATAGAGCTA TCTTTAAAAT CGCAGTGTAC ACCACAGACT CCTAGCTCCC CAGCAAACAC
  TGAATAAATG TACATTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38118545	NES09286088	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27952822					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38118545	NES09286088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72614763 () rs orientation: forward

Symbol	Name	Function Class
6430710C18Rik	RIKEN cDNA 6430710C18 gene	within coordinates
Gm39848	predicted gene, 39848	within coordinates
Rr559034	regulatory region 559034	1736 bp distal
Rr559035	regulatory region 559035	984 bp proximal