rs27955100 SNP Detail

Summary

• ID
  rs27955100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49103724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAATAAG TTTCTCTCAA
  TGGTAGTAAC ATCTTCTGAA ACCATAGAAA CAGATCACAA TTACATCAAA GTAGAGCTCA
  TTCTGTTTTA TTTATTTGTC ACAAAGTATG TGGAAGGGGT CTGCCTGTGC ATGAGTGTGT
  GTATGTTTCT GTGCCTGTAT GTGAGTGTTA GGGTATATGT ATATATGAAC AGTTACACAT
  R
  TAGATATTGA GTTCAATGGT CAACAGGTCA TCTTCTATTG CTCCCTACAT TCTTTCTTTC
  CTTCTCTTCC TTCTTCCAGT TTCTTCTTTA TGCTTCCATT TTTTTTTTTT TTTTGAGTCA
  TAGTCTCTCA TTGAACCTGA AACTCACTGA ATAGCTAGAT TGACTAAAAC GTTACCTCTG
  GGGGGTCACC TGTCTCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38085326	NES09352382	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27955100					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38085326	NES09352382	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49103724 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbd5	methyl-CpG binding domain protein 5			Intron
				Noncoding-Transcript-Variant
Rr556611	regulatory region 556611			1584 bp distal