rs27955102 SNP Detail

Summary

• ID
  rs27955102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49100256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGAACTT CTCTTCATCC
  TTACTAATGG AAAATGATAT TCGTTTGGCT ATAATTGCAA TGAATGCCTT TTTATTGGTC
  ACAAAAGAAT TCTAATAGCT GATTGCCCTT GAAAATGGAG TCACAGATCT GTGTGGTCAC
  TCAAACAGTA AAAATACATT TGACTTTTGG ATTATTTAGC TCTATCTTGC TATGTTGGTG
  R
  CAAGGAGGCT TTTAAGTTTA TTATTTTTGT GTATTTATGT GTATGTGTTC TGTATATGTA
  TGGACACATA TGGCACAGGG AGCACTGGGC TACATTTTAA GCTAGCATTA TAATTTGTCA
  ATCTAATAGG CATCATGTAC TTGATACTTG TTTTGAAGGC AAAGATGGAA GATTGGGGGG
  TTTATAGAGA GATACTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38085328	NES09352487	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27955102					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38085328	NES09352487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49100256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbd5	methyl-CpG binding domain protein 5			Intron
				Noncoding-Transcript-Variant
Rr556611	regulatory region 556611			1863 bp proximal