rs27957019 SNP Detail

Summary

• ID
  rs27957019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69580611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA GGACGAAAAG ACCAGATCCC
  Y
  GGTGGAAAAA GAAAACCAAA AATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38129542	NES09282265	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27957019					SNP	C	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129542	NES09282265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69580611 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	1297 bp downstream
Tssr18140	transcription start site region 18140	1268 bp downstream
Tssr18141	transcription start site region 18141	1249 bp downstream
Tssr18142	transcription start site region 18142	1230 bp downstream
Tssr18143	transcription start site region 18143	1190 bp downstream
Tssr18144	transcription start site region 18144	994 bp downstream
Tssr18145	transcription start site region 18145	863 bp downstream
Tssr18146	transcription start site region 18146	773 bp downstream
Tssr18147	transcription start site region 18147	717 bp downstream
Tssr18148	transcription start site region 18148	681 bp downstream
Tssr18149	transcription start site region 18149	662 bp downstream
Tssr18150	transcription start site region 18150	617 bp downstream
Tssr18151	transcription start site region 18151	594 bp downstream
Tssr18152	transcription start site region 18152	525 bp downstream
Tssr18153	transcription start site region 18153	443 bp downstream
Tssr18154	transcription start site region 18154	337 bp downstream
Tssr18155	transcription start site region 18155	316 bp downstream
Tssr18156	transcription start site region 18156	265 bp downstream
Tssr18157	transcription start site region 18157	246 bp upstream