rs27957020 SNP Detail

Summary

• ID
  rs27957020
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69580610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AAGTGAAGTC CTCCACATTA AAAAATCAAG AGGACGAAAA GACCAGATCC
  M
  CGGTGGAAAA AGAAAACCAA AAATCAAAGG GTCAAGAAAA TGACCATGTA           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129543	NES09282264	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27957020					SNP	C	C	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129543	NES09282264	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69580610 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	1296 bp downstream
Tssr18140	transcription start site region 18140	1267 bp downstream
Tssr18141	transcription start site region 18141	1248 bp downstream
Tssr18142	transcription start site region 18142	1229 bp downstream
Tssr18143	transcription start site region 18143	1189 bp downstream
Tssr18144	transcription start site region 18144	993 bp downstream
Tssr18145	transcription start site region 18145	862 bp downstream
Tssr18146	transcription start site region 18146	772 bp downstream
Tssr18147	transcription start site region 18147	716 bp downstream
Tssr18148	transcription start site region 18148	680 bp downstream
Tssr18149	transcription start site region 18149	661 bp downstream
Tssr18150	transcription start site region 18150	616 bp downstream
Tssr18151	transcription start site region 18151	593 bp downstream
Tssr18152	transcription start site region 18152	524 bp downstream
Tssr18153	transcription start site region 18153	442 bp downstream
Tssr18154	transcription start site region 18154	336 bp downstream
Tssr18155	transcription start site region 18155	315 bp downstream
Tssr18156	transcription start site region 18156	264 bp downstream
Tssr18157	transcription start site region 18157	247 bp upstream