rs27957021 SNP Detail

Summary

• ID
  rs27957021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69580561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTCGTGA TCATAATAGC TCAAGTAATA ACAGGGAAAA
  AAAGGCTGAT AGAGAGCAAA GTCCAGTGTC AAAAACAAAG CAAAGCAGTC AGGACAATGA
  R
  GTGAAGTCCT CCACATTAAA AAATCAAGAG GACGAAAAGA CCAGATCCCC GGTGGAAAAA
  GAAAACCAAA AATCAAAGGG TCAAGAAAAT GACCATGTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129544	NES09282263	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	A	G	G	A	A
ss45378185	mCV25080783	ABI	CRAMUS_MOUSE	f	SNP		G					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27957021					SNP	A	G	G	G	G	G	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129544	NES09282263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69580561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr18139	transcription start site region 18139			1247 bp downstream
Tssr18140	transcription start site region 18140			1218 bp downstream
Tssr18141	transcription start site region 18141			1199 bp downstream
Tssr18142	transcription start site region 18142			1180 bp downstream
Tssr18143	transcription start site region 18143			1140 bp downstream
Tssr18144	transcription start site region 18144			944 bp downstream
Tssr18145	transcription start site region 18145			813 bp downstream
Tssr18146	transcription start site region 18146			723 bp downstream
Tssr18147	transcription start site region 18147			667 bp downstream
Tssr18148	transcription start site region 18148			631 bp downstream
Tssr18149	transcription start site region 18149			612 bp downstream
Tssr18150	transcription start site region 18150			567 bp downstream
Tssr18151	transcription start site region 18151			544 bp downstream
Tssr18152	transcription start site region 18152			475 bp downstream
Tssr18153	transcription start site region 18153			393 bp downstream
Tssr18154	transcription start site region 18154			287 bp downstream
Tssr18155	transcription start site region 18155			266 bp downstream
Tssr18156	transcription start site region 18156			215 bp downstream
Tssr18157	transcription start site region 18157			296 bp upstream