rs27957022 SNP Detail

Summary

• ID
  rs27957022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69580339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CGAAGAACGC CAGGACGATC GAGAAGTAAA GATAGGAGGA GAAGAAGGAG
  R
  GATTCCCGGA GCTCAGAGAG AGAAGAAAGT CAAAGTAGAA ACAAAGATAA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129545	NES09282262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27957022					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129545	NES09282262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69580339 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	1025 bp downstream
Tssr18140	transcription start site region 18140	996 bp downstream
Tssr18141	transcription start site region 18141	977 bp downstream
Tssr18142	transcription start site region 18142	958 bp downstream
Tssr18143	transcription start site region 18143	918 bp downstream
Tssr18144	transcription start site region 18144	722 bp downstream
Tssr18145	transcription start site region 18145	591 bp downstream
Tssr18146	transcription start site region 18146	501 bp downstream
Tssr18147	transcription start site region 18147	445 bp downstream
Tssr18148	transcription start site region 18148	409 bp downstream
Tssr18149	transcription start site region 18149	390 bp downstream
Tssr18150	transcription start site region 18150	345 bp downstream
Tssr18151	transcription start site region 18151	322 bp downstream
Tssr18152	transcription start site region 18152	253 bp downstream
Tssr18153	transcription start site region 18153	171 bp downstream
Tssr18154	transcription start site region 18154	65 bp downstream
Tssr18155	transcription start site region 18155	44 bp downstream
Tssr18156	transcription start site region 18156	within coordinates
Tssr18157	transcription start site region 18157	518 bp upstream