rs27957023 SNP Detail

Summary

• ID
  rs27957023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69580204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA AGAGTGCGGT CCAGAAGCCA
  Y
  GACAGAGATC GCAGCAGAAG CAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38129546	NES09282261	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T		C	T	T	T		C	T	T	C		C
ss45261777	mCV25080774	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss320332157	CHEV_2_69587917	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27957023					SNP	C	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129546	NES09282261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69580204 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	890 bp downstream
Tssr18140	transcription start site region 18140	861 bp downstream
Tssr18141	transcription start site region 18141	842 bp downstream
Tssr18142	transcription start site region 18142	823 bp downstream
Tssr18143	transcription start site region 18143	783 bp downstream
Tssr18144	transcription start site region 18144	587 bp downstream
Tssr18145	transcription start site region 18145	456 bp downstream
Tssr18146	transcription start site region 18146	366 bp downstream
Tssr18147	transcription start site region 18147	310 bp downstream
Tssr18148	transcription start site region 18148	274 bp downstream
Tssr18149	transcription start site region 18149	255 bp downstream
Tssr18150	transcription start site region 18150	210 bp downstream
Tssr18151	transcription start site region 18151	187 bp downstream
Tssr18152	transcription start site region 18152	118 bp downstream
Tssr18153	transcription start site region 18153	36 bp downstream
Tssr18154	transcription start site region 18154	57 bp upstream
Tssr18155	transcription start site region 18155	78 bp upstream
Tssr18156	transcription start site region 18156	120 bp upstream
Tssr18157	transcription start site region 18157	653 bp upstream