rs27957024 SNP Detail

Summary

• ID
  rs27957024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69578979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGATCAA AATCTGCTAT
  ATCTTGGCTT ATTGGTATTT CTTCAGTAAA GTGGTTAGCC ATCCATCTGA AAACTGAGTA
  AATTTTGGTT GAACAAAAGA CTTCTGTGAG TTTATTCTAT TTCTCATGTT CTTTGCCTTG
  GAGAGTGATG TATATGCAAC ATTCAAATGA GAAATTGGAA ATTTGTAGTA GTTAATATAC
  R
  GCATATTCTA GTACCAGTTT AGCAGGACTG TTTCTAGCAA GGTGTTAAAA GCCCGAGTTT
  CTGTGGATAT TGTTACATAC TTGGAATTTA GGATAAGACT GCCAGTGTTC TACCAGAAAA
  GTAAGACATT TTTATTTTGT AGATGATTAG ATTCTAGAGT CTGATGTATG CTAACCGCGT
  GTTCTTATCT CATTCCTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38129547	NES09282260	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27957024					SNP	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129547	NES09282260	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69578979 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	315 bp upstream
Tssr18140	transcription start site region 18140	353 bp upstream
Tssr18141	transcription start site region 18141	368 bp upstream
Tssr18142	transcription start site region 18142	391 bp upstream
Tssr18143	transcription start site region 18143	423 bp upstream
Tssr18144	transcription start site region 18144	627 bp upstream
Tssr18145	transcription start site region 18145	743 bp upstream
Tssr18146	transcription start site region 18146	844 bp upstream
Tssr18147	transcription start site region 18147	893 bp upstream
Tssr18148	transcription start site region 18148	932 bp upstream
Tssr18149	transcription start site region 18149	956 bp upstream
Tssr18150	transcription start site region 18150	1002 bp upstream
Tssr18151	transcription start site region 18151	1017 bp upstream
Tssr18152	transcription start site region 18152	1093 bp upstream
Tssr18153	transcription start site region 18153	1178 bp upstream
Tssr18154	transcription start site region 18154	1282 bp upstream
Tssr18155	transcription start site region 18155	1303 bp upstream
Tssr18156	transcription start site region 18156	1345 bp upstream
Tssr18157	transcription start site region 18157	1878 bp upstream