rs27957025 SNP Detail

Summary

• ID
  rs27957025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69578297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT TGCTCTCGTC AGCCTTGCTT
  R
  TTGCAGTCAG CCCCACTCAC TCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38129548	NES09282295	PERLEGEN	MM_PANEL2	f	SNP	G			A		G	A	A		G	A	A	G		G
ss45228101	mCV25080762	ABI	CRAMUS_MOUSE	f	SNP		A	A		G
ss146730179	ENSMUSSNP552755	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320332154	CHEV_2_69586010	CHEVERUD	SCREENING_POP	f	SNP									A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27957025					SNP	G	A	A	A	G	G	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129548	NES09282295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69578297 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18138	transcription start site region 18138	1914 bp downstream
Tssr18139	transcription start site region 18139	997 bp upstream
Tssr18140	transcription start site region 18140	1035 bp upstream
Tssr18141	transcription start site region 18141	1050 bp upstream
Tssr18142	transcription start site region 18142	1073 bp upstream
Tssr18143	transcription start site region 18143	1105 bp upstream
Tssr18144	transcription start site region 18144	1309 bp upstream
Tssr18145	transcription start site region 18145	1425 bp upstream
Tssr18146	transcription start site region 18146	1526 bp upstream
Tssr18147	transcription start site region 18147	1575 bp upstream
Tssr18148	transcription start site region 18148	1614 bp upstream
Tssr18149	transcription start site region 18149	1638 bp upstream
Tssr18150	transcription start site region 18150	1684 bp upstream
Tssr18151	transcription start site region 18151	1699 bp upstream
Tssr18152	transcription start site region 18152	1775 bp upstream
Tssr18153	transcription start site region 18153	1860 bp upstream
Tssr18154	transcription start site region 18154	1964 bp upstream
Tssr18155	transcription start site region 18155	1985 bp upstream