rs27957026 SNP Detail

Summary

• ID
  rs27957026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69578056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAGCTAT GAAAGTAGTT
  ACATGTTTTA TAGTCTGAGT GATCATGATG TGACAGGTGG AAGGGGCATA AGCTATATTT
  AACAATAGTC GCAGTAGTCA ATAAAAAAAC GTAAATCTGG GCTGGAGATG AATCTCCACT
  GATGGAGTAC TTTCCTAGTA TGCAGAAGAC CTTAAGTTGA ATATCTAGCT AGTACTTTTG
  Y
  GCATTGGTCA AGTCTGATTA GTATTGTAGT CCTGTAGTAT TGACTTTAGA ATAAATTTTA
  AAAATAGCAT AGACTAAGCC CTTACAAAAA TCTATTCTGT TTATTTCATC AGTATGGTCA
  AGTTTTGCTT TCTCTTGTCC TGTCTTGTGA TACTGTAGCT TTACAGATGG TTGTGAGCCT
  TCATGTGGTT GTGGAAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129549	NES09282311	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27957026					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129549	NES09282311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69578056 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18138	transcription start site region 18138	1673 bp downstream
Tssr18139	transcription start site region 18139	1238 bp upstream
Tssr18140	transcription start site region 18140	1276 bp upstream
Tssr18141	transcription start site region 18141	1291 bp upstream
Tssr18142	transcription start site region 18142	1314 bp upstream
Tssr18143	transcription start site region 18143	1346 bp upstream
Tssr18144	transcription start site region 18144	1550 bp upstream
Tssr18145	transcription start site region 18145	1666 bp upstream
Tssr18146	transcription start site region 18146	1767 bp upstream
Tssr18147	transcription start site region 18147	1816 bp upstream
Tssr18148	transcription start site region 18148	1855 bp upstream
Tssr18149	transcription start site region 18149	1879 bp upstream
Tssr18150	transcription start site region 18150	1925 bp upstream
Tssr18151	transcription start site region 18151	1940 bp upstream