rs27957028 SNP Detail

Summary

• ID
  rs27957028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69577481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT GTGACCACTT AGTCTTCAGA
  R
  CTCAGAGCTC TTTAGGCTGC TGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss38129551	NES09282340	PERLEGEN	MM_PANEL2	f	SNP	A			G		G	G		G	G	G
ss45308005	mCV25080663	ABI	CRAMUS_MOUSE	f	SNP		G	G		A		G
ss146730176	ENSMUSSNP4645375	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss320332151	CHEV_2_69585194	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27957028					SNP	A	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129551	NES09282340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69577481 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Rr558460	regulatory region 558460	1847 bp distal
Tssr18138	transcription start site region 18138	1098 bp downstream
Tssr18139	transcription start site region 18139	1813 bp upstream
Tssr18140	transcription start site region 18140	1851 bp upstream
Tssr18141	transcription start site region 18141	1866 bp upstream
Tssr18142	transcription start site region 18142	1889 bp upstream
Tssr18143	transcription start site region 18143	1921 bp upstream