rs27957029 SNP Detail

Summary

• ID
  rs27957029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69577460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAA ACTTAGTATG GAGAGTACAG
  Y
  GTGACCACTT AGTCTTCAGA ACTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38129552	NES09282339	PERLEGEN	MM_PANEL2	f	SNP	T			C	C	C	C		C	C	C	C		C	C	C	C		C
ss45242839	mCV25080662	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss146730174	ENSMUSSNP2285243	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320332150	CHEV_2_69585173	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27957029					SNP	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129552	NES09282339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69577460 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Rr397019	regulatory region 397019	1994 bp downstream
Rr558460	regulatory region 558460	1826 bp distal
Tssr18138	transcription start site region 18138	1077 bp downstream
Tssr18139	transcription start site region 18139	1834 bp upstream
Tssr18140	transcription start site region 18140	1872 bp upstream
Tssr18141	transcription start site region 18141	1887 bp upstream
Tssr18142	transcription start site region 18142	1910 bp upstream
Tssr18143	transcription start site region 18143	1942 bp upstream