rs27957030 SNP Detail

Summary

• ID
  rs27957030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69577345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTTGAT TCCAAGTTAC
  AAAATCCATT GAATCCTCTC AGTCATTACT TAGGATTTCT CCTTAAAATG TTCTCTGTAT
  TGTTTCATCT GTTCTTTTCC TGTCTCTTAA GCCAGTCTAT CTTAAACGTA GACTACTATT
  TTGCATCCTG TACATGACCT ACATGTCAAG ACTCAAGTTT ATTTTAAGTT GCACATACTC
  Y
  TTAGACAGGC TCTTTTACTC ACATGGATGG CTGATAATTC ACAGCTCCAT CTGCTCTTGG
  CACCAAAGGT TTGTTTGGCT GATGAGCACC TCAAACTTAG TATGGAGAGT ACAGTGTGAC
  CACTTAGTCT TCAGAACTCA GAGCTCTTTA GGCTGCTGCT CACAGTGAGT CATGGGACCA
  CCTGTGTGAG CCAAGAATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129553	NES09282338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27957030					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129553	NES09282338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69577345 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Rr397019	regulatory region 397019	1879 bp downstream
Rr558460	regulatory region 558460	1711 bp distal
Tssr18138	transcription start site region 18138	962 bp downstream
Tssr18139	transcription start site region 18139	1949 bp upstream
Tssr18140	transcription start site region 18140	1987 bp upstream