rs27959829 SNP Detail

Summary

• ID
  rs27959829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70092567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATGCAGA GTGAAATAAA
  GCCCCAGGGC GCCAGGAGAC AGGGCCACTC CTGTGTTGTC TAGCAGCAGC TAAGTCTGGT
  GAGAAAGATA GCGGTGCTAG AGGGTGCTCT CATCCCAAGG TTCTCATCCC AAGGTTCGCA
  GTCAGCACTG GATAAACAGA GGCAGCCACA GTCAGCATGG ATTCTCTTCC TTTTGGCCTG
  Y
  TGCCCTGACC ATGCTTTGGC CTGCAGGTGG ACTATTTCAG GACTAGTAAG TGTTATTGCA
  CGGGGCTCCT CACACCACAA TGGACAACCA GATCTATGCG GTAAACATGT TGGTCTACCT
  CGCAGTGCTA TTCTGCCTTG TGTGGTCATG CTGTGTGCCT CTCTGCTAAC ACTGAGCTGC
  ATGAGATATA AGACAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38127648	NES09288462	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27959829					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38127648	NES09288462	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70092567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myo3b	myosin IIIB			Intron
				Noncoding-Transcript-Variant
Rr558531	regulatory region 558531			1262 bp distal
Rr558532	regulatory region 558532			510 bp distal
Rr558533	regulatory region 558533			1 bp distal
Rr558534	regulatory region 558534			273 bp proximal