rs27959838 SNP Detail

Summary

• ID
  rs27959838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70091151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTGCC TGCCTGCCTG
  TCTGCCTGTC TGTCTGTCTG TCTGTCTGTC TGTCTGCCTG CCTGCCTGTA ATTGTAGTAT
  AGCCTTTGAA GAGAAGTCTC TTTTTTTCAC TGAAATTGAA AGCATTTGTT TCAGGTGTAT
  GCTTGTCTCT TTGAAGGGGT GGAAGTGGCT AGACATTGCT GTGAGAGACA AAGAAGGCCC
  R
  GTTACTCTGG CAACATAATT CCAGTGCTTG GAAACCCATT GTTTATGTCA TTTTATTTAC
  CCTGCTTCAA AACTTAAATG AATGGCTCAT TGGTTAAGAG CACTTGGTGC TCTTGTAGAG
  GAGCCAAGTT CCGTTCCCAG CCCCCATATG GTGGCTCAGA ACTGTCTATA ACTCCAGTCC
  CAGGAGATCC CATGCCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38127657	NES09288519	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27959838					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38127657	NES09288519	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70091151 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myo3b	myosin IIIB			Intron
				Noncoding-Transcript-Variant
Rr558530	regulatory region 558530			817 bp distal
Rr558531	regulatory region 558531			within coordinates
Rr558532	regulatory region 558532			885 bp proximal
Rr558533	regulatory region 558533			920 bp proximal
Rr558534	regulatory region 558534			1689 bp proximal