rs27959839 SNP Detail

Summary

• ID
  rs27959839
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70090507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGAGAG AGAGAGAGAG AGAGAGAAAG GGAGAGAGAC
  AGAAGGAGAG AGGAAACAAA CGTGATATCC TAGCAAGCTC CTCTGTGATT CTGAGCTGTG
  S
  ACGATGCTGT TTTTTTTTTT TTGAATTGTA AATCCACTCT TCTTCAAATT TTGAATAATA
  TTAAAAGCAG CATGTAAGTG TCAAAACTAA AAGGCAAGAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss38127658	NES09288524	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27959839					SNP	C	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38127658	NES09288524	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70090507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myo3b	myosin IIIB			Intron
				Noncoding-Transcript-Variant
Rr558530	regulatory region 558530			173 bp distal
Rr558531	regulatory region 558531			544 bp proximal
Rr558532	regulatory region 558532			1529 bp proximal
Rr558533	regulatory region 558533			1564 bp proximal