rs27959972 SNP Detail

Summary

• ID
  rs27959972
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78636018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAATAGAAA CTGTGTACAC TATTGATGCC TATATAATTC
  CTGCGAAATA CAGCAATGTG TTCTCTGAGA ACAAAGCATA CCACAAACTA AGCGCACATG
  S
  ACGGACACAC ACACACACAC ACACACACAC ACACACACAC ATATATATAT ACATGCACAC
  ACACATGTTT TAATTGAAAT TAAATTTTTC ATTCCCTTAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38095797	NES09258805	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27959972					SNP	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38095797	NES09258805	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78636018 () rs orientation: forward

Symbol	Name	Function Class
Gm39865	predicted gene, 39865	within coordinates
Gm75779	predicted gene, 75779	within coordinates
Rr559884	regulatory region 559884	1821 bp distal
Rr559885	regulatory region 559885	456 bp distal