rs27959973 SNP Detail

Summary

• ID
  rs27959973
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78635564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTTAGC TTGATGCTTT
  TGTTGGACAC CTGACAGTGG GAGTTAGTAA GGCAGTAATG GATTCTCTGA GAACCCCAAT
  TTTCTTATCT TTCCTATCAG TTGTCTCAGA AGGCTGCTGT TAGAGAGTTG AAATTAGATA
  ACGCATGTAA GGTGCTTCAT TCTCAGATAT TTTTGCCTGC TCTTATAACC CCTTTAACCC
  W
  TCTGGCTTGC CTCCCCAGGC TTGATGTGAG GCATTATTGT ATCTTGTTAT TGTAAGCCAA
  AGAAAGAATA TATAGAATCT CATTGGACAG GTGACGTAAT ATAAACACAT GCAAACAGCA
  GAATTGTCAG TCTTAAACCA CAGGGCAAAA CTGCCCACTA ATTTCTACAA GCATTCCAAA
  GCATGGCCAT ATACATACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38095798	NES09258801	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27959973					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38095798	NES09258801	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78635564 () rs orientation: forward

Symbol	Name	Function Class
Gm39865	predicted gene, 39865	within coordinates
Gm75779	predicted gene, 75779	within coordinates
Rr559884	regulatory region 559884	1367 bp distal
Rr559885	regulatory region 559885	2 bp distal