rs27960530 SNP Detail

Summary

• ID
  rs27960530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68945081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACCTAAA TGGATCAGAG
  GATACTGATT TTTCCCAAAT CGTGAAGGAG CTATCAATAG CTAATCTCTA AAGCACAATG
  GGAAACAGCC CGTCTCTGTG CATGCGCCTC AGAACAGCTT GCATCAGCTT GGGATCCGGG
  CTCTGCATTT CTGGGCCTTT TTTCCTTTTT TTTTTTTTTT TTTTTTGCAT CTGTGCTTAC
  R
  TCATGTAGGA TCTCAGAAGG CATCAGATAG CACCGAAATG CACTTAGACA ACACCACAAT
  TATATTTTTA AAAACCCACT TCGAAAAAAA AAAATCTTAG CAATACTGAT GTCATCCTGA
  ACAGTGATCC GATTCACACA GTAACTCTAG CGAAGTCACC AGAATTTCTC TGAAACACAA
  ACTATAAGAA AAATCACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132449	NES09289000	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	A	G	A	G	G	G
ss146727004	ENSMUSSNP3998624	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27960530					SNP	G	A	A	A	A	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132449	NES09289000	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68945081 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	455 bp downstream
Rr44228	regulatory region 44228	1681 bp distal
Rr44229	regulatory region 44229	681 bp distal
Rr44230	regulatory region 44230	1920 bp proximal
Rr50098	regulatory region 50098	81 bp distal
Rr50099	regulatory region 50099	1320 bp proximal
Tssr18101	transcription start site region 18101	1166 bp downstream
Tssr18102	transcription start site region 18102	1134 bp downstream
Tssr18103	transcription start site region 18103	927 bp downstream
Tssr18104	transcription start site region 18104	13 bp downstream