rs27960532 SNP Detail

Summary

• ID
  rs27960532
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68944792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACTTTC ATAATAAAGA
  TAAACATTAA GAGTACAGCA TGAGTGTCCT TTATTGTAAG CATCGACCAG CTGAATTGGG
  AACACATCCA ACATCTCTGG GTGGGACTGT GTCAGAGCTC AGCCATCCGG TTATTTCTTA
  ATGATTCTCC AAGGCGTTGT GACCATTGAG AAATACTGTT ATATCGTCTT GTGATATGCT
  W
  AAGTGTCTCC TTGAAATTTA GGGTGCAAAG CCTTCAGTGT TAAATCTCAC GGTAACACCC
  CATTCTGGAA ACAGGGTTTC TAGAGAAAGC AACCTAAATG GATCAGAGGA TACTGATTTT
  TCCCAAATCG TGAAGGAGCT ATCAATAGCT AATCTCTAAA GCACAATGGG AAACAGCCCG
  TCTCTGTGCA TGCGCCTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132451	NES09288998	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27960532					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132451	NES09288998	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68944792 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	166 bp downstream
Rr44228	regulatory region 44228	1392 bp distal
Rr44229	regulatory region 44229	392 bp distal
Rr50098	regulatory region 50098	within coordinates
Rr50099	regulatory region 50099	1609 bp proximal
Tssr18100	transcription start site region 18100	1865 bp downstream
Tssr18101	transcription start site region 18101	877 bp downstream
Tssr18102	transcription start site region 18102	845 bp downstream
Tssr18103	transcription start site region 18103	638 bp downstream
Tssr18104	transcription start site region 18104	273 bp upstream