rs27960538 SNP Detail

Summary

• ID
  rs27960538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68943917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTCATT CACTCACGGC
  CTTTTAGGCT TCTGGAACTC TGGTAAAAGA AAGCCAGATG CTAACATTTT TCTGCTTTCA
  GTTTACTAAT GACTGTTAGA TCAGCTCTTC CCATCCCTTC TTCTCTGTCT GGTGCCATTT
  TCAGGAGGTG GGAGAGGGTG TGCCCATGTA CACCTGTCTC CTTAACACAG GTCCACGAAT
  R
  CTTAGCTTCC TGGGTTGTGT GTCTTCTGAG AACCATGGTA CAGCGTCAGT CACCATAGTT
  TCTGTGCTCA GTGGAAAATT TTGATTTCAT TCATATTTTT ATTCTCTTTA CCTATGATAA
  ATGTCATAAA CTGTAAAACT CTCCTTAATG TGAAACTTTT TTTGGTTTTT TGTTTTGTTT
  GTTTGGGTTT TTTTTGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132460	NES09289129	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27960538					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132460	NES09289129	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68943917 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Rr44228	regulatory region 44228	517 bp distal
Rr44229	regulatory region 44229	284 bp proximal
Rr50098	regulatory region 50098	284 bp proximal
Tssr18100	transcription start site region 18100	990 bp downstream
Tssr18101	transcription start site region 18101	2 bp downstream
Tssr18102	transcription start site region 18102	9 bp upstream
Tssr18103	transcription start site region 18103	231 bp upstream
Tssr18104	transcription start site region 18104	1148 bp upstream