rs27960554 SNP Detail

Summary

• ID
  rs27960554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68942942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATTTCT GCTTAGTCAA
  TAAGTCGTCA TAGCCCTGCA ATGGTTCTAA CACCCAAAGG AGAAAAACAT CAAACAAGAC
  CAGAGTCGCC CTGAGGGGAT AGTGATCACC TGGCTCTTGT GTAGCAAGAA AGAAATGTGG
  AGGGCTCTAA CTACTGCAGG TGCCTTCAAG TATGCTGCCC CTGTCAGGAA TGATCATAAA
  Y
  GTTCTTAAAG TGAAACAAGA CTGTTTCCTT ACATGTATGC TTCCCACTAT CAGCTTCTCT
  TCCAGAGGTG AGATTGTGCC ATTCTCCAAA TGCTGTGAGC TAATTAGCAA TAGTCTACCA
  ATCACATTTT AGTTCCATGA ACTGATGGGC TAAAGGAGGG CCCTCCTTTC ACCTATGTGT
  ACATAGCACC CACCCACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132476	NES09289111	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27960554					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132476	NES09289111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68942942 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Tssr18099	transcription start site region 18099	1420 bp downstream
Tssr18100	transcription start site region 18100	15 bp downstream
Tssr18101	transcription start site region 18101	962 bp upstream
Tssr18102	transcription start site region 18102	984 bp upstream
Tssr18103	transcription start site region 18103	1206 bp upstream