rs27960558 SNP Detail

Summary

• ID
  rs27960558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68942683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACATTAC TAATCATTTT
  GGGGTAAATC AATGTCAGAG TTGCCTGGAT ATTTGAGTAT TTTCCTTAAT TTGAAGAAGA
  AAAATAGTGT GTAGAATTAG CCCAAAGGTA CGGATGTGGG CCATTTATCA GTATGGGAGA
  TGATGTCATT AACCCAGAGA GGCCGCAACA CCTTTGGAAA TAAGAAGTTA AGTGCTGGCC
  Y
  TTTGTGTAAT GTTTGTGGTA CTAAGGCTCC TACCTGCCTT TCACTTTCCT TGTCTTCGGC
  TTATTTCTGC TTAGTCAATA AGTCGTCATA GCCCTGCAAT GGTTCTAACA CCCAAAGGAG
  AAAAACATCA AACAAGACCA GAGTCGCCCT GAGGGGATAG TGATCACCTG GCTCTTGTGT
  AGCAAGAAAG AAATGTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132480	NES09289107	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27960558					SNP	T	C	C	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132480	NES09289107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68942683 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Rr44228	regulatory region 44228	318 bp proximal
Rr44229	regulatory region 44229	1518 bp proximal
Rr50098	regulatory region 50098	1518 bp proximal
Tssr18099	transcription start site region 18099	1161 bp downstream
Tssr18100	transcription start site region 18100	199 bp upstream
Tssr18101	transcription start site region 18101	1221 bp upstream
Tssr18102	transcription start site region 18102	1243 bp upstream
Tssr18103	transcription start site region 18103	1465 bp upstream