rs27960565 SNP Detail

Summary

• ID
  rs27960565
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68942126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAGTGAT TGCCATTTAA
  CCCCATGGTT CTAATGTCTG CTGAACTGCC AGACAGAGCA TATCCCAAAT TATCATTAGA
  TTGTGTCATT GGCGTCCAAT GCTGATGAAC AAGGCAGCAA AGGCACGGAC CAAGAAAGAC
  CAGTCATCTT TAGTCCATAT GGTAGGTGAG TCTCAAACTG GTAAACTCCT GTCTGAGTCA
  K
  ACACTTAGCA AAAGCACTGC GTGCTACCAT GGTCCCAAAA GGTGATGACA TAGCCTAGGT
  ACAGAGGCGG TACTGTCTGC TGTGTGTAAG TACACTTATT GATGTTCGCA GAGTGACAAA
  AATGTGTCCC TGCTGTGACA TGACATAGGC CTATACTTTT TGAGCAAATG TATTGCCTTT
  CCTTCACTTT AGATAGAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38132487	NES09289100	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27960565					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38132487	NES09289100	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68942126 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Rr44228	regulatory region 44228	875 bp proximal
Rr62255	regulatory region 62255	1527 bp distal
Tssr18097	transcription start site region 18097	1890 bp downstream
Tssr18098	transcription start site region 18098	1827 bp downstream
Tssr18099	transcription start site region 18099	604 bp downstream
Tssr18100	transcription start site region 18100	756 bp upstream
Tssr18101	transcription start site region 18101	1778 bp upstream
Tssr18102	transcription start site region 18102	1800 bp upstream